PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn363591
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 295aa    MW: 31932.4 Da    PI: 8.9967
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn363591genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.7e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w++
       Achn363591  5 KQKWTSEEEAALKAGVTKYGAGKWSTILKDPEfsillYSRSNVDLKDKWRN 55
                     79************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.912161IPR017930Myb domain
SuperFamilySSF466897.33E-16259IPR009057Homeodomain-like
SMARTSM007179.2E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-14556IPR009057Homeodomain-like
PfamPF002497.3E-8556IPR001005SANT/Myb domain
CDDcd116603.07E-19657No hitNo description
SuperFamilySSF467852.61E-17115190IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-16116188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.1E-18116181IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.927118186IPR005818Linker histone H1/H5, domain H15
PfamPF005381.9E-12120179IPR005818Linker histone H1/H5, domain H15
CDDcd000737.47E-11120180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV TKYGAGKWST ILKDPEFSIL LYSRSNVDLK DKWRNMNVAA  60
NGWGSRSRVR VASKSNQQIV KDDDKALSTV SQSDTEIVDA QPLAGSNGTS ENASSKKPIP  120
RLDNLILEAI TNLKEPRGSS RAAIAIYIEE RYLAPENLER LLASTLKLLT ENGKLVKVKH  180
QFRIAPPSIH TDVKKGSSPL FLEGKQKNSP KVDKNEIKIL SKSQIDAELE KMKGMTAQEA  240
AAAAALAVAE AEAAIAEAEE AAREAEKAEA EAEAAQLFAE AAMKALKCRT VCTW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066825.11e-98PREDICTED: single myb histone 6-like isoform X1
RefseqXP_015066826.11e-98PREDICTED: single myb histone 6-like isoform X1
RefseqXP_015066827.11e-98PREDICTED: single myb histone 6-like isoform X1
SwissprotQ8VWK44e-74TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A068U2431e-103A0A068U243_COFCA; Uncharacterized protein
STRINGSolyc02g064630.2.11e-95(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-73telomere repeat binding factor 1